Taxonomic list of marine species and associated coding

ABSTRACT OF DATA REPORT

Miller, R. and Chabot, D. 2014. Code List of Marine Plants, Invertebrates and Vertebrates Used by the Quebec Region of DFO. Can. Data Rep. Fish. Aquat. Sci. 1254: iv + 115 p.

This report presents a list of marine vertebrates, invertebrates and plants along with their respective data base codes used by the science branch at Maurice Lamontagne Institute, Fisheries and Oceans Canada. The coded list of species was adopted from the Newfoundland Region of DFO in the 1980’s, called the STRAP code. With the addition of several new codes over time, the two series are now sufficiently different that a description of the IML codes is necessary. In recent years the scientific names in the list have been standardized with ITIS and WoRMS.

MASTER FILE (Excel Format)

This master file complements the report listing plants, invertebrates, fishes, birds and marine mammals used at the Maurice Lamontagne Institute. Most of the taxonomic units mentioned in the list have a 3 to 4 digit code, called the IML code, used during DFO operations in the Quebec region. Other codes are also provided. First, the codes used in the Maritimes region of DFO are included, because these codes are used in the Quebec Region’s commercial sampling database and the Observer programs. Some of the Maritimes’ taxa do not have an IML code because they have not yet been found in in the Estuary and Gulf of St. Lawrence. NAFO (Northwest Atlantic Fisheries Organization) and STACAC (Statistical Coordinating Committee for the Atlantic Coast) codes are also included to facilitate conversion between these coding systems. The master file also provides the classification code for the specimen collection at MLI, and the specimens may be considered as voucher specimens for the presence of taxa in a particular area of the Estuary and Gulf of St. Lawrence. Also included are columns for Phylum, Class, Order and Family for all taxa, which facilitate sorting and grouping of taxa. The classification is generally based on WoRMS but in certain cases of discrepancy, ITIS classification was used, generally because it corresponded better with the conventional taxonomic guides used in the laboratory. Two other worksheets in the master Excel file provide a list of codes to describe details about specimens, such as ontogenic stage (egg, larval stage, juvenile, adult), sex, or animal part (shell, carapace, beak, otolith), and a list of references consulted during the validation of the species list.

COLUMN HEADERS AND DESCRIPTIONS OF THE MASTER FILE
Code IMLTaxa code
DetailSee column “Stage” or tab “Detail”
Taxonomic levelTaxonomic classification level
Linnaean nameScientific name
French nameThe French name is not always from a reliable source
English nameThe English name is not always from a reliable source
AuthorTaxonomic author and year
ReferenceReferences and taxonomic works consulted
Difference – ITISDifferences with ITIS database:
x = not in ITIS database
nv = not valid in ITIS
dg = difference in genus name
de = difference in species name
StatusStatus code for the taxon:
2 = obsolete duplicate (in one of the codification schemes)
X = obsolete name, invalid
S = junior synonym junior; 2 codes for same name
– = ontogenic stage
! = off list (composite, part of species, etc.).
P, E= Pacific, European, not in our region
& = uncertain
General Species Code (Oracle)General Species Code used in Oracle databases in the Quebec Region
STRAP QC (old)STRAP code with additions by Gascon/Archambault for taxa not included in the Newfoundland list. Obsolete; replaced with modifications be Chabot.
TSNTaxonomic Serial Number” given by ITIS
AphiaIDCode used by WoRMS
Collection IMLClassification code classification used for marine organism collection at IML
MaritimesCode used by Maritimes Region, commercial sampling and Observer programmes.
NAFOCode used by Northwest Atlantic Fisheries Organisation
NAFO (mn. sp.)Code used by NAFO for main species
STACACCode used by Statistical Co-ordinating Committee for the Atlantic Coast
NMFSCode used by National Marine Fisheries Service
PlanktonCode used in “Plankton” database
StageOntogenic stage or other detail (egg, larva, no detail, shell, operculum, beak, large, small, tube, nauplius, parasitic, gravid female, adult, juvenile)
RemarksInformation about taxonomic status, synonyms, etc.)
FamilyClassification according to WoRMS or ITIS
OrderClassification according to WoRMS or ITIS
ClassClassification according to WoRMS or ITIS
PhylumClassification according to WoRMS or ITIS